The primary reference for the CMIP5 simulations performed with CSIRO-Mk3.6.0 is
Jeffrey, S. J., Rotstayn, L. D., Collier, M. A., Dravitzki, S. M., Hamalainen, C., Moeseneder, C., Wong, K. K., and J. I. Syktus (2013). Australia's CMIP5 submission using the CSIRO Mk3.6 model, Australian Meteorological and Oceanographic Journal, 63, 1–13, http://www.bom.gov.au/amoj/docs/2013/jeffrey_hres.pdf.
The primary reference for the CSIRO-Mk3.6.0 model (the precise version used in CMIP5) is
Rotstayn, L. D., S. J. Jeffrey, M. A. Collier, S. M. Dravitzki, A. C. Hirst, J. I. Syktus, and K. K. Wong (2012). Aerosol- and greenhouse gas-induced changes in summer rainfall and circulation in the Australasian region: a study using single-forcing climate simulations, Atmos. Chem. Phys., 12, 6377–6404, doi:10.5194/acp-12-6377-2012 . http://www.atmos-chem-phys.net/12/6377/2012/acp-12-6377-2012.html
It has detail about the model and CMIP5-specific information.
If possible, please cite one or both of these papers if you use output from CSIRO-Mk3.6.0 in a publication.

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